Nat, thanks! It worked this time! Mengbin Chen On Tue, Jun 4, 2013 at 12:25 AM, Nathaniel Echols wrote:

On Mon, Jun 3, 2013 at 7:43 PM, Mengbin Chen wrote:

...

I was able to get to the step where "scons: done building targets." showed up, and set up the environment by typing setenv /Users/yanghai/Desktop/rosetta-3.5 into the shell. I also filled out the "path to rosetta" in "Preferences" under "PHENIX GUI", which I believe it is correct. However, when I was ready to run MR-rosetta, it kept saying "cannot locate Rosetta programs. You may set the path in PHENIX GUI under preferences->Automation, or define the environment variable PHENIX_ROSETTA_PATH (recommended)".

You need to restart the GUI before the preferences setting will have the intended effect. I'll fix this so it works immediately in the future.

-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

-- Mengbin Chen Department of Chemistry University of Pennsylvania