TRIED resolve ...NEED A BIGGER VERSION... message
Howdy Phenixians, One of my users is running phenix.autobuild, and while it seems to run okay, the output contains this warning: TRIED resolve ...NEED A BIGGER VERSION... Looking through phenix/phenix/autosol/run_resolve.py, it seems like this is an informational message, but I'm not sure, so I figured I'd ask. Is this actually an error? This is phenix-1.3-final on OS X 10.5. Thanks. -ben -- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org http://hms.harvard.edu
Hi Ben, Yes, that is just FYI. There are a few sizes of resolve and this means the smallest wasn't big enough. I'll change the message so that it is more informative... All the best, Tom T Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss On Jan 5, 2009, at 8:09 AM, Ben Eisenbraun wrote:
Howdy Phenixians,
One of my users is running phenix.autobuild, and while it seems to run okay, the output contains this warning:
TRIED resolve ...NEED A BIGGER VERSION...
Looking through phenix/phenix/autosol/run_resolve.py, it seems like this is an informational message, but I'm not sure, so I figured I'd ask.
Is this actually an error?
This is phenix-1.3-final on OS X 10.5.
Thanks.
-ben
-- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org http://hms.harvard.edu _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
Tom, does it mean that for structure of ANY size the right version of RESOLVE will be activated now automatically? If it does, it is very important improvement FF Dr Felix Frolow Professor of Structural Biology and Biotechnology Department of Molecular Microbiology and Biotechnology Tel Aviv University 69978, Israel Acta Crystallographica D, co-editor e-mail: [email protected] Tel: ++972 3640 8723 Fax: ++972 3640 9407 Cellular: ++972 547 459 608 On Jan 5, 2009, at 5:25 PM, Tom Terwilliger wrote:
Hi Ben, Yes, that is just FYI. There are a few sizes of resolve and this means the smallest wasn't big enough. I'll change the message so that it is more informative... All the best, Tom T
Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545
Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http:// solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/ cbss
On Jan 5, 2009, at 8:09 AM, Ben Eisenbraun wrote:
Howdy Phenixians,
One of my users is running phenix.autobuild, and while it seems to run okay, the output contains this warning:
TRIED resolve ...NEED A BIGGER VERSION...
Looking through phenix/phenix/autosol/run_resolve.py, it seems like this is an informational message, but I'm not sure, so I figured I'd ask.
Is this actually an error?
This is phenix-1.3-final on OS X 10.5.
Thanks.
-ben
-- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org http://hms.harvard.edu _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
_______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
Hi Felix, Well almost. It will activate the right size if it exists in the distribution that you have. The normal extra_huge version is "isizeit = 36" which is 6 x the standard size. If that is not big enough autobuild will stop. I can provide bigger versions if you need them (and then they will automatically be used). All the best, Tom T Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss On Jan 5, 2009, at 8:36 AM, Felix Frolow wrote:
Tom, does it mean that for structure of ANY size the right version of RESOLVE will be activated now automatically? If it does, it is very important improvement FF Dr Felix Frolow Professor of Structural Biology and Biotechnology Department of Molecular Microbiology and Biotechnology Tel Aviv University 69978, Israel
Acta Crystallographica D, co-editor
e-mail: [email protected] Tel: ++972 3640 8723 Fax: ++972 3640 9407 Cellular: ++972 547 459 608
On Jan 5, 2009, at 5:25 PM, Tom Terwilliger wrote:
Hi Ben, Yes, that is just FYI. There are a few sizes of resolve and this means the smallest wasn't big enough. I'll change the message so that it is more informative... All the best, Tom T
Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545
Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss
On Jan 5, 2009, at 8:09 AM, Ben Eisenbraun wrote:
Howdy Phenixians,
One of my users is running phenix.autobuild, and while it seems to run okay, the output contains this warning:
TRIED resolve ...NEED A BIGGER VERSION...
Looking through phenix/phenix/autosol/run_resolve.py, it seems like this is an informational message, but I'm not sure, so I figured I'd ask.
Is this actually an error?
This is phenix-1.3-final on OS X 10.5.
Thanks.
-ben
-- Ben Eisenbraun Structural Biology Grid Harvard Medical School http://sbgrid.org http://hms.harvard.edu _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
_______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
_______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
participants (3)
-
Ben Eisenbraun -
Felix Frolow -
Tom Terwilliger