Installation problem
Dear Phenix BB When I tried to install the latest binary version (1.6.1), the "install" script always stopped and dumped an error message as follows: ----- /software/PHENIX/phenix-installer-1.6.1-357/bin/install-from-binary: line 347: 10964 Floating point exception$PHENIX_BUILD/base/bin/python $PHENIX_LOC/cctbx_project/libtbx/configure.py -- current_working_directory="$PHENIX_BUILD" $PHENIX_COMPONENTS >> $PHENIX_LOG/binary.log 2>&1 Error configuring: see /software/PHENIX/phenix-installer-1.6.1-357/ build-binary/intel-linux-2.6-x86_64/lupus/log/binary.log for details ----- And this "binary.log" file looks like this; ========== . . After many lines... . ./reduce/comment_out_carboxylate_H_v2.3.pl ./reduce/Makefile ./reduce/libtbx_refresh.py ========== This never happened when I installed version 1.6-289. Could anybody out there tell me how I can get around this? Or anything important is missing? The system I'm using is: Linux crux 2.6.16.60-0.27-smp #1 SMP Mon Jul 28 12:55:32 UTC 2008 x86_64 x86_64 x86_64 GNU/Linux SUSE Linux Enterprise Desktop 10 (x86_64) VERSION = 10 PATCHLEVEL = 2 Thank you very much for your help in advance! Best regards, kami Tatsuya KAMINISHI, Ph.D. Fucini Laboratory Institute for Organic Chemistry and Chemical Biology Johann Wolfgang Goethe University Max-von-Laue-Strasse 7, N160/B413 D-60438 Frankfurt am Main, Germany Tel: +49 69 798-29165 Fax: +49 69 798-29268 Web: http://user.uni-frankfurt.de/~joharms/akfucini/
On Fri, Apr 2, 2010 at 5:47 AM, Tatsuya Kaminishi < [email protected]> wrote:
Dear Phenix BB
When I tried to install the latest binary version (1.6.1), the "install" script always stopped and dumped an error message as follows:
----- /software/PHENIX/phenix-installer-1.6.1-357/bin/install-from-binary: line 347: 10964 Floating point exception
I think the "Floating point exception" is the problem here, but there isn't enough information to tell me exactly what's breaking. My best guess is that it's some kind of binary incompatibility - we switched computers for the x86_64 installer shortly after releasing version 1.6, which has caused one or two other problems on assorted flavors of Linux. (And I think SuSE has been a source of trouble in the past.) I would recommend installing from source: https://www.phenix-online.org/download/phenix/source/ It takes several hours to build, so if you have multiple processors/cores, we recommend adding "--nproc=X" (were X = number of processes to run simultaneously) to the install command to speed it up. -Nat
participants (2)
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Nathaniel Echols
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Tatsuya Kaminishi