It's very unlikely that phenix.refine ignores it. These options are very old and are used routinely by many users. Therefore questions: - how you know that they are ignored? - could you please send me the log file? Note, that these weight optimizations start by default after certain number of macro-cycles, not immediately. There are several modes and you can use any you like. You can ask it to start from the first macro-cycle. Pavel. On 11/3/09 6:28 AM, Xuewu Zhang wrote:

Hi phenix developers/gurus,

I am using the latest night build of phenix on OS X snow leopard. I found that phenix ignores these lines in my custom refinement file:

refinement.target_weights.optimize_wxc="True" refinement.target_weights.optimize_wxu="True"

Manually setting up the scale factors however works. I am not sure whether this is a bug or a platform related issue.

Thanks, Xuewu Zhang

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