Phaser and PTNCS - bug fixed in latest builder for Phenix?
Dear all, I noticed on the Phaserwiki webpage (news section) that there is a bugfix (dated 14th of August/2012) for Phaser as the "Packing test was incorrectly applied to reoriented molecules where there was PTNCS". I had a look in the "changes" file, but could not find if this bugfix is part of the latest Phenix installer (dev-1143) or not. Could anybody clarify this point for me? Thanks a lot. Best wishes, Rafael.
On Wed, Aug 29, 2012 at 7:53 AM, Rafael Lemos Miguez Counago
I noticed on the Phaserwiki webpage (news section) that there is a bugfix (dated 14th of August/2012) for Phaser as the "Packing test was incorrectly applied to reoriented molecules where there was PTNCS".
I had a look in the "changes" file, but could not find if this bugfix is part of the latest Phenix installer (dev-1143) or not. Could anybody clarify this point for me?
Yes, absolutely. The Phenix nightly builds always contain the very latest code for Phaser (and everything else, for that matter), and we don't use separate release and development "branches"; if you download dev-1143, you're getting the code we wrote yesterday. (Which of course implies some risk, but we try not to release anything obviously broken.) The changelog for our installers tends to lag behind because I am the only person who bothers to update it, but now that I know about the Phaser news, I will incorporate this. -Nat
Thanks!
________________________________________
From: [email protected] [[email protected]] on behalf of Nathaniel Echols [[email protected]]
Sent: Thursday, 30 August 2012 1:04 AM
To: PHENIX user mailing list
Subject: Re: [phenixbb] Phaser and PTNCS - bug fixed in latest builder for Phenix?
On Wed, Aug 29, 2012 at 7:53 AM, Rafael Lemos Miguez Counago
I noticed on the Phaserwiki webpage (news section) that there is a bugfix (dated 14th of August/2012) for Phaser as the "Packing test was incorrectly applied to reoriented molecules where there was PTNCS".
I had a look in the "changes" file, but could not find if this bugfix is part of the latest Phenix installer (dev-1143) or not. Could anybody clarify this point for me?
Yes, absolutely. The Phenix nightly builds always contain the very latest code for Phaser (and everything else, for that matter), and we don't use separate release and development "branches"; if you download dev-1143, you're getting the code we wrote yesterday. (Which of course implies some risk, but we try not to release anything obviously broken.) The changelog for our installers tends to lag behind because I am the only person who bothers to update it, but now that I know about the Phaser news, I will incorporate this. -Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
Hi Rafael, When a bug is fixed and committed to our code repository, then the fix automatically becomes part of the next successful nightly build of Phenix. So this bugfix will indeed be included in last night's (dev-1143) build, or any other builds after the 14th of August. Best wishes, Randy Read On 29 Aug 2012, at 15:53, Rafael Lemos Miguez Counago wrote:
Dear all,
I noticed on the Phaserwiki webpage (news section) that there is a bugfix (dated 14th of August/2012) for Phaser as the "Packing test was incorrectly applied to reoriented molecules where there was PTNCS".
I had a look in the "changes" file, but could not find if this bugfix is part of the latest Phenix installer (dev-1143) or not. Could anybody clarify this point for me?
Thanks a lot.
Best wishes,
Rafael. _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
------ Randy J. Read Department of Haematology, University of Cambridge Cambridge Institute for Medical Research Tel: + 44 1223 336500 Wellcome Trust/MRC Building Fax: + 44 1223 336827 Hills Road E-mail: [email protected] Cambridge CB2 0XY, U.K. www-structmed.cimr.cam.ac.uk
participants (3)
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Nathaniel Echols -
Rafael Lemos Miguez Counago -
Randy Read