On Mon, Mar 21, 2011 at 2:23 PM, Phoebe Rice
How can I get phenix to spit out not just PhiModel but an estimated FOM or fake HL coefficients (without experimental phases - just based on how badly my model agrees with FOBS)? And I'd like the weights in their own personal mtz column(s), not just precombined in a "weighted phi" column.
It wouldn't surprise me if there is some command that already does this that I don't know about. However, it looks like we have almost everything we need to do this in CCTBX, and we're only missing a command to actually output the desired data. I threw together a script that appears to do the job, but I'm not 100% confident that the output is correct. I'll add it as "phenix.fmodel_phases" as soon as I can verify that there aren't any stupid coding errors. (You're not the first person to ask for this, but it wasn't obvious to me before how to write it.) If there is an equivalent command in CCP4 that does this, I'd recommend using that for now. (I'm pretty sure that Resolve can do this too, but I don't know the input keywords to use for running it without density modification.) -Nat