It is reassuring to know that you guys took care of that. I will be looking forward to the publication. Thanks, Engin On 4/21/10 12:50 PM, Pavel Afonine wrote:
By the way, I have a related question for Pavel. When you guys were culling the PDB for structures, was there any attention paid to correct the ones that have residual B-factors in the PDB file?
Yes, it's taken care of automatically by phenix.model_vs_data: it automatically recognizes if a PDB file contains residual or total B-factors. Twinning is takes care of too. There will be paper about it soon. The results of phenix.model_vs_data run for "all" PDB entries forms the database for POLYGON.
I am asking this, because a few structures I solved recently to ~2 Angstrom resolution were all closer to the upper range of observed structures according to POLYGON, so I thought this could possibly be one reason.
If you tell me which structures concern you then I will check.
Pavel.
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