28 Mar
2011
28 Mar
'11
2:58 a.m.
Hi Hailiang, I guess to be able to run phenix.refine you need to follow phenix.refine style -;) Most likely using phenix.elbow or phenix.ready_set and defining custom bonds and angles as described here: http://phenix-online.org/documentation/refinement.htm#anch86 should be enough to do what you want. If not, then please send me the inputs and tell what exactly you are trying to do, and I will send you back a working example. Pavel.
I want to run phenix.refine on a glycoprotein, but the sugars are not in the standard library. I just wonder whether there is a refmac-style syntax (LIBIN) in phenix.refine to include a user-written ligand library, instead of adding and modifying the existing phenix library.