Wei
I think the problem with the apply_cif_link may be that the atoms are more
than 3 angstrom apart. Could you send me the cyclic peptide directly?
Nigel
NB. Any files sent to me will be held in strictest confidence.
On Thu, Dec 12, 2013 at 8:14 AM, wei xia
Hi, I am trying to refine a structure with a cyclic peptide ligand. I create a 'TRANS' link between the C-ter and N-ter residues of the cyclic peptide during refinement. But there is obvious no bond formed between the two residues in the refined structure. I checked the geo file and found that there are only angle restraints but no bond restraints between the two residues Anyone can help me out? Thanks in advance!
Wei
P.S.
refinement.pdb_interpretation.apply_cif_link {
data_link = TRANS
residue_selection_1 = chain D and resname MVA and resid 5005
residue_selection_2 = chain D and resname ARG and resid 5001
}
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