Hi Luke,
How big is your loop. I normally try to built it one molecule at a time from
both ends of the loop in COOT, refine and re-try loop building. Some times,
if the electron density is ok you can build the whole loop one amino-acid at
a time by iterative COOT, refinement and loop building.
Ivan
On Fri, Dec 10, 2010 at 11:40 AM, Luke Rice
Hi All,
I am trying to see if I can save myself some time by using the loop fitting tools in Phenix. I think I am stalling out because of a trivial problem, but cursory googling, etc, has not helped. Sorry if I should have tried harder. I appreciate any help.
I am using the gui, dev-601. My fasta sequence gets read fine because the output reports the sequence of the missing residues. Whether I use the loop library or not, I get the following error:
Unable to find suitable gap to fill
Then it appears to try to build the loop using sequence from a different chain (I have three chains in my structure).
What am I doing wrong?
Luke
-- Luke M. Rice Assistant Professor and Thomas O. Hicks Scholar in Medical Research Department of Biochemistry, ND10.300 UT Southwestern Medical Center 5323 Harry Hines Blvd. Dallas, TX 75390-8816 phone: (214) 645-5931 email: [email protected] _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb