Hi Phil,
That script looks fine.  If you have NCS, then it is good to add

ha_file my-ha-sites.pdb

so that it can find the NCS.  Also your script will build a model...to skip that say

no_build

If you are building a model I'd recommend also trying phenix.autobuild which will generally do much better than the resolve run in your script.

If you are wanting to run HYSS -> PHASER -> RESOLVE then you can also just run phenix.autosol which will do that for you.

All the best,
Tom T

On Jul 13, 2009, at 11:35 AM, Phil Jeffrey wrote:

Although my usual m.o. is SHELX -> SHARP I'm exploring
HYSS -> PHASER -> RESOLVE to see if the maps are any more interpretable.
 I think I've got good scripts for the first two steps but I'm not sure
about my resolve script which stands at:

phenix.resolve << EOD
hklin myp3_auto.mtz
LABIN FP=F SIGFP=SIGF PHIB=PHIB FOM=FOM HLA=HLA HLB=HLB HLC=HLC HLD=HLD
hklout resolve.mtz
solvent_content 0.45
seq_file myp3.pir
EOD

This runs, but I could not tell from delving into the documentation if
this was ideal or not.

Thanks
Phil Jeffrey (a Luddite and not using the GUI)
Princeton
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Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

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