Hi all
I have some trouble installing rosetta. I followed the instruction as in
https://www.phenix-online.org/documentation/reference/rosetta_install.htmland everything went ok up to
% rosetta.build_phenix_interface nproc=n
but then
% rosetta.run_tests
fails with
Rosetta command-line arguments:
-parser:protocol /buffer/desancti/xtal/rosetta_src_2016.32.58837_bundle/main/source/src/apps/public/crystal_refinement/low_resolution_refine.xml
-s 1yjp_rosetta_in.pdb
-mtzfile 1yjp_rosetta_data.mtz
-run:preserve_header
-crystal_refine
-parser:script_vars symmdef=1yjp_rosetta.symm
-parser:script_vars bfactstrat=individual
-parser:script_vars map_type=Auto
-score:weights talaris2013_cart
-nstruct 1
Generating 2 models on 1 processors...
DEBUG dumping error message
ERROR: Rosetta exited with status 139
stderr output:
Segmentation fault (core dumped)
Traceback (most recent call last):
File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 305, in <module>
run(sys.argv[1:], create_dir=True)
File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 191, in run
debug=params.output.debug)
File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/modules/phenix/phenix/rosetta/refine.py", line 313, in __init__
self.run_jobs()
File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/modules/phenix/phenix/rosetta/refine.py", line 388, in run_jobs
check_result(result)
File "/buffer/desancti/xtal/phenix/phenix-1.12-2829/modules/phenix/phenix/rosetta/refine.py", line 379, in check_result
raise RuntimeError("Aborted due to error in job %d." % result.job_id)
RuntimeError: Aborted due to error in job 1.