On Sat, Dec 3, 2011 at 2:10 PM, Dialing Pretty
Dear All and Nat,
The Ming webpage is following, which I am also in the learning process.
http://kinemage.biochem.duke.edu/teaching/workshop/MolProbity/
Oh, did you mean "KiNG"?
Will you please also introduce me a webpage based on which I can reduce my rotamer outlier (currently 8% by Phenix evaluation).
The tutorials at that URL are the best introduction I know of.
The outlier here (for rotamer) analyzed by Phenix evalutation is defined by that the outlier rotamer conformaton does not comply with the statstics of the rotamer conformation of that residue in the published PDB, or it is because the so-called rotamer outlier is caused by its the outlier rotamer conformation does not comply with the electronic density map?
They're purely statistical - the fifth citation on that page ("The penultimate rotamer library") gives details. The validation in PHENIX does calculate fit to the electron density, but this is done separately. -Nat