Thank you Francis and Sabine for your help. phenix.print_sequence worked fine. The only problem I had with one pdb, for some reason the sequence of each subunit was doubled. There was no such problem with the pdbset. Maia Maia Francis E Reyes wrote:
phenix.print_sequence
phenix.* has a lot of good utils I didnt know about until I tab completed it.
FR
On Jun 8, 2009, at 9:17 AM, chern wrote:
Hi everybody,
I am building a model of protein and the sequence has wrong parts. I want to compare it to the original sequence side-by-side. How can I extract a one-letter sequence from the pdb file? This information should be easily generated by auto build. I mean, I give the pdb and get the fasta format sequence.
Maia _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
--------------------------------------------- Francis Reyes M.Sc. 215 UCB University of Colorado at Boulder
gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D
8AE2 F2F4 90F7 9640 28BC 686F 78FD 6669 67BA 8D5D
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