Dear Fish, can you let me know what the error message is and which Phenix version are you using? Your alignment file looks OK to me. Thanks, Gabor On Apr 25 2012, Zhang yu wrote:
Dear Phenixer,
When I used Sculptor to generate a new model, there is a error which I can not figure out. I input a PDB file (*.pdb) and an alignment file (*.aln).
The following is the log file (contents in ######). There seems something wrong with the *.aln file. ################# Reading PDB file ----------------
File name: **/**/******/******/**.pdb Separating solvent from macromolecules...
Reading alignment files -----------------------
1. **/**/**.aln
#####################
The following is the content of the alignment file:
**_** MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV **_** ---------MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRET * **: :*: :* * .**::*::: :: * : *::****..
What is the problem with the alignment file?
Thank you in advance! Fish
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