We are having the same problem. Sugars are not linked properly
after runing
phenix.refine, whereas they are fine using CNS. Distance can be
preserved, but the bond angles are wrong.
I am using phenix-1.4-2.
Jose M Casasnovas
Quoting Tirumala Kumar Chowdary
Hi,
My question is related to the 'refining sugars in phenix' questions that have been appearing on the bb for the last two days.
I am trying to refine my NAGs and somehow phenix is ignoring the sugars in my structure. Neither it is making a bond between my ASN and NAG nor NAG-NAG bond. My nag-nag.cif and cif_link.params are read properly, though.
I am using in version 1.4.125 still. Is this the problem ? Does upgrading to any of the later build will help ?
Tirumal
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