Re: [phenixbb] Hydrogens

Yes, it is a bug and I am working on the fix. Pavel On 3/21/12 7:32 AM, Nathaniel Echols wrote:

On Wed, Mar 21, 2012 at 1:48 AM, Christopher Wanty wrote:

...

I’ve been refining with riding hydrogens, and from what I’ve read hydrogen contribution should be included in Fo calculation automatically for maps. What I’m seeing after refinement is a lot of little bits of green in the difference density that look like they could be explained by hydrogens. I’m working at 1.4A, attached image gives an example and shows contours at 3 sigma for difference map.

Is there a setting/parameter I need to adjust to get this to work properly? It's a bug:

http://www.phenix-online.org/pipermail/phenixbb/2012-March/018460.html

-Nat