You don't need to create cif files; phenix has them. NAG is definitely there, and you can have two NAGs linked by any biologically-relevant glycosidic bond you want. You need to define the links, however. I think posting the cif_link.params may get you more help. Engin On 9/30/09 8:49 AM, Tirumala Kumar Chowdary wrote:
Hi,
My question is related to the 'refining sugars in phenix' questions that have been appearing on the bb for the last two days.
I am trying to refine my NAGs and somehow phenix is ignoring the sugars in my structure. Neither it is making a bond between my ASN and NAG nor NAG-NAG bond. My nag-nag.cif and cif_link.params are read properly, though.
I am using in version 1.4.125 still. Is this the problem ? Does upgrading to any of the later build will help ?
Tirumal
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