On Mon, Dec 20, 2010 at 11:23 AM, Luke Rice
I tried what you suggested (dragging my ss restraints file into the input area), and it does not seem to be working (i.e. my edited restraints do not show up; also the filename never appears in the box). I tried changing the fsuix to .eff or .def or .txt, none worked. If instead I drag my restraints file onto the phenix.refine icon, I get a warning about 'this application does not support the filetype ...'.
Hmm, sounds like a parser issue. A handy tip: to check the syntax of a Phenix parameter file (for any program, not just phenix.refine), you can run this command (replacing params.eff with the file of interest): libtbx.phil params.eff If it works, it will just print out the parameters - if not, the error message should give some indication where the error occurred. (Or you can just send me the file off-list. Perhaps I should add this function to the GUI too?) -Nat