Guenter
I cannot get the Amber and AFITT menu bars in the phenix.refine GUI on a Ubuntu (Xubuntu 18.04) box.
Do you have AFITT installed and setup following https://www.phenix-online.org/documentation/reference/afitt.html Regarding Amber, Ubuntu is the problem child for many things including Phenix-Amber. I'm hoping Billy can help here.
I set Preferences "Enable alpha-test programs and features" (works on my Mac 10.14.6 and SciLinux6 box ).
Don't think this matters for Amber anymore as it's distributed with Phenix.
Moreover, on the Xubuntu machine: when I start the phenix.refine GUI (phenix version 1.18.2-3874) I see the following error message in the terminal running phenix:
*$ phenix*
*Could not import the compiled Python-sander interface. Make sure you have the Python development libraries installed and that you have sourced amber.sh or amber.csh *
Does it crash? Billy probably has the answers here.
*------------------------*
python 3.7 is installed and python development tools :
*------------------------ *
*$ python -V * *Python 3.7.6 *
*$ sudo apt list -a python3.7-dev * *Listing... Done * *python3.7-dev/bionic-updates,now 3.7.5-2~18.04 amd64 [installed] * *python3.7-dev/bionic-security 3.7.3-2~18.04.1 amd64 *
*python3.7-dev/bionic 3.7.0~b3-1 amd64 *
*------------------------*
Phenix 1.18.2 should be the last major release to use Python2 so you need to have it available. Nigel