Re: [phenixbb] Rebuild fails in Rosetta-MR

If I remember correctly (quite possibly not), this is to do with a newer binary being run on a older version of the OS. Is this possible? We are in the process of updating the Rosetta/Phenix installation instructions, so it might be that compiling Rosetta with Phenix might fix the problem (but does require a compiler). Nigel might have some thoughts.

On Feb 22, 2016, at 6:13 AM, Rhys Grinter wrote:

Dear all,

I'm currently trying to improve an model for a difficult MR problem using Rosetta-MR,

When the program gets to the Rebuild stage it fails with the following message: Error message:

child process stderr output:

command: 'sh .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh"'

.../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/run_rebuild.sh: line 5: 8996 Trace/BPT trap: 5 "/Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease" @"rebuild.flags" > "rebuild.log" 2>&1

Failed to run REBUILD

Sorry: Failed to run REBUILD...see log file in .../MR_ROSETTA_17/GROUP_OF_ROSETTA_REBUILD_1/RUN_1/REBUILD_IN_SETS_1/RUN_4/WORK_1/rebuild.log

Sorry: mr_rosetta failed...

Sorry routine failed

Please see log file for full error message

In the rebuild logfile:

dyld: lazy symbol binding failed: Symbol not found: ___sincos_stret Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___sincos_stret Referenced from: /Applications/Rosetta/main/source/bin/mr_protocols.macosclangrelease Expected in: /usr/lib/libSystem.B.dylib

Has anyones experienced this error?

Cheers,

Rhys

-- Dr Rhys Grinter Sir Henry Wellcome Fellow Monash University +61 (0)3 9902 9213 +61 (0)403 896 767 _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]

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