Re: [phenixbb] Autobuild error - bash/dash/sh

Hi Nat, By 'crash', I mean the GUI just hangs and no longer refreshes. But...I just tested with a sequence file with no headers (named protein.seq) and this worked fine. If I try and load the PIR formatted sequence I get a sensible error message. But if I try and load a FASTA formatted sequence file (called sequence.fasta) the GUI becomes unresponsive. Will send files offline, Stephen On 26 October 2010 16:03, Nathaniel Echols wrote:

On Tue, Oct 26, 2010 at 3:15 AM, Stephen Graham wrote:

...

P.S.  The reason I'm trying to run autobuild from the command line rather from the GUI is that the GUI seems to crash every time I give autobuild a sequence file in either the FASTA or PIR format.  Is there another format I should be using?

As Tom says, a plain sequence and nothing else will work - but I use FASTA and PIR for testing, and they should be okay.  Could you please send me a sequence file that has this problem?  (And by "crash", do you mean "completely quits", or "raises an error message"?)

thanks, Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

-- Dr Stephen Graham 1851 Research Fellow Cambridge Institute for Medical Research Wellcome Trust/MRC Building Addenbrooke's Hospital, Hills Road Cambridge, CB2 0XY, UK Phone: +44 1223 762 638