Hi Nat,
It looks like the crisis has been averted. One of my colleagues suggested that the problem could be due to running Phenix on our data processing server and when I tried to run it locally instead, the problem cleared up. Go figure. :p
Thanks for your help regardless! Let me know if you would still like me to send any files in case it's something that you should know about.
~Brennan~
________________________________________
From: [email protected] [[email protected]] On Behalf Of Nathaniel Echols [[email protected]]
Sent: Wednesday, January 09, 2013 2:57 PM
To: PHENIX user mailing list
Subject: Re: [phenixbb] Refining anomalous groups
On Wed, Jan 9, 2013 at 12:51 PM, Brennan Bonnet
I apologize, Phenix does not attempt to open Coot at this point but it does attempt to open some sort of viewing program which causes Phenix to crash.
I am running Fedora 17 and Phenix 1.8.1-1168
The only error message given is: Segmentation fault (core dumped)
Yuck. Just to make sure it's not a bug in our code, could you please send me the input PDB file (I don't need data)? I will try to reproduce the problem tomorrow. You might also want to consider trying a different installer; which one did you download? We do not have a Fedora 17 build yet, but maybe we should. -Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb