Would just like to thank everyone for all of their helpful suggestions. Was
doing a lot of replies off list. Thanks again.
Louis
On Tue, Mar 1, 2011 at 1:18 AM, Pavel Afonine
Hi Jared,
2. In PyMOL (or another similarly capable program), load the molecule,
remove the unwanted hydrogens, and save the new pdb. If you're not familiar with PyMOL selection syntax, try something like this:
load model_reduce.pdb remove (elem H and not resi 10) save model_resi10_H.pdb, model_reduce
you could do it in PHENIX:
phenix.pdbtools model_with_H.pdb remove="element H and not (chain A and resseq 10)"
Pavel.
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