22 Oct
2010
22 Oct
'10
1:53 p.m.
Hi Shya,
I have a related question, when you run phenix.model_vs_data you get recomputed R and R free values, what does this mean? I ran my data and got the following: Model_vs_Data: r_work(re-computed) : 0.1823 r_free(re-computed) : 0.2076 bulk_solvent_(k_sol,b_sol) : 0.36 44.79 overall_anisotropic_scale_(b_cart) : 21.60 -11.34 -9.52 -0.00 -0.00 -0.00 solvent_content_estimated_via_mask : 41.5 %
these are the value computed using your all input data (no resolution or sigma cutoffs) and input model. The other values are those extracted from PDB file header, and those computed using resolution and sigma cutoffs (if any were used). Pavel.