Thanks. The options keep changing with version updates. The command line "phenix.pdbtools --help" does NOT list all options. After some digging I found that the equivalent option is model_statistics=true without the preceding '--'. Thanks, Abhinav JCSG@SSRL, SLAC Phone: (650) 926-2992 Fax: (650) 926-3292 On 10/21/2011 10:07 AM, Ed Pozharski wrote:
Normally you should be able to get the list of options by just running the command without parameters. It may, of course, be incomplete: the version that I have lists both --show-adp-statistics and --show-geometry-statistics as "Show complete ADP (B-factors) statistics.", which is unlikely.
On Fri, 2011-10-21 at 09:45 -0700, Abhinav Kumar wrote:
Hi,
I had been using the pdbtools to obtain the rmsd on various geometry parameters using the command: phenix.pdbtools my.pdb --show-geometry-statistics
Now pdbtools does not recognize the option "--show-geometry-statistics"
What is the option now?
I am using phenix-1.7.2-869. --
Thanks, Abhinav
JCSG@SSRL, SLAC Phone: (650) 926-2992 Fax: (650) 926-3292
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