Re: [phenixbb] sculptor

On Thu, Nov 18, 2010 at 5:47 PM, Nathaniel Echols wrote:

On Thu, Nov 18, 2010 at 2:31 PM, Bryan Lepore wrote: I think it is expecting exactly the same output as CLUSTALW, which has a slightly different first >line than MAFFT.

bingo

 We now distribute a multiple sequence alignment program >called MUSCLE with Phenix - you can use it like this:

yes thanks - i saw that in there ;^)

Sculptor should also take alignments in FASTA or PIR format.  (Make sure you use the correct file extension,

HERE we go - .fasta is running. but clustalw extension is .aln, right? oh also : wouldn't this be a good candidate for multi-processor threading? -Bryan