Re: [phenixbb] omit map

Can't you just delete your ligand from the pdb file? Jacob On Fri, Jun 3, 2011 at 10:41 AM, Desi Mail wrote:

But the 2Fo map around the ligand without omit is well defined. Phenix defines a very big box around the target pdb-includes surrounding protein residues. Is there a way to control this?

The omit map of the water molecule in the binding site is also poor.

Thanks

On Fri, Jun 3, 2011 at 10:37 AM, Ed Pozharski wrote:

...

On Fri, 2011-06-03 at 10:21 -0400, Desi Mail wrote:

...

But the 2Fo density around the ligand is very poor.

perhaps your ligand is disordered

-- "Hurry up before we all come back to our senses!"                           Julian, King of Lemurs

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