Dear all, Recently I deposited a structure to PDB. However, I was told
The R value of SF check are different from your reported value.
R work in SF check = 0.2859 your reported R work = 0.1474 Also there are no R free flags in your sending files, but you reported R free value in your all deposition.
So, I rerun my deposited file with phenix.refine, and it gave a R-work=0.1475, R-free=0.1742. However, when I tried to run the same file with refmac5, error came with "Free R label has not been set". I guess phenix.refine gives Rree-R label that other program could not recognize. Could anyone please help me to solve this problem? Thank you very much in advance. I don't know why structure refined with phenix.refine has such problem. I wish this problem will disappear in the future, since I so like phenix.refine. Best, Vinson,Liang