Not surprisingly, recompiling from source did not fix my problem.
Phenix (and python) run fine on several computers with PAE kernels in
the lab. So, it seems to me that this is likely a processor/chipset
issue more than a kernel problem. The only differences between the
machines that work and the one that doesn't is the hardware.
Quoting "Ralf W. Grosse-Kunstleve"
Sorry if this is a naive question, but is there a known bug with phenix (or python?) on PAE kernels?
Thanks for the "PAE" clue! This finally sheds some light on the strange error you get, which I've seen a few times before. In my experience, even compiling from sources (including Python) doesn't help. I'm guessing the error will need to be fixed in Python. This may not happen quickly. Can you reboot your system without PAE? Starting with Fedora 11, which just came out this week, 64-bit kernels are the default even on 32-bit machines. IMO that's the best way forward. (The Fedora 11 system we have has been stable for the few days it is up and runs all the phenix tests without problems.)
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