Re: [phenixbb] how to cut off side chain from a model

You can also use pdbtools to keep any specific selection that you like. In your case, you can run: phenix.pdbtools keep="backbone or name CB" model.pdb That should do the trick. Thanks, Jeff On Fri, Feb 11, 2011 at 3:03 PM, crystallogrphy wrote:

Hi, I am refining a low resolution data (4.7A). I want to cut off all side chains from my model because they cannot be seen from the density. Phenix pdbtools can only keep the backbone, but cannot keep the Cbeta atom. What program I can use to cut off all the side chain, but keep the Cbeta atoms?

Thanks!

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