On Aug 15, 2009, at 7:51 AM, Thomas C. Terwilliger wrote:
You can run from the command line in the same place you ran from the GUI by saying
phenix.autosol autosol.eff debug=True
because the GUI writes out autosol.eff when it runs, saving your inputs. Then you can override those values by putting debug=True on the command line.
One small correction to this: the .eff file gets written to a different location now (not the current directory). It will be in the directory phenix/project_data/ in whatever the project directory is, and it will have a name like "autosol_0.eff". I only use these internally in the GUI; to re-run the project, you should use the file autosol.eff in whatever the output directory was, e.g.: % phenix.autosol AutoSol_run_1_/autosol.eff debug=True This has the final parameters that AutoSol actually used once it started (it figures out some things automatically that the GUI doesn't bother with). If it works this way, there may be something wrong with the GUI; I'll check and make sure nothing has broken, but it hasn't changed recently (although the next build will have some unrelated fixes). -Nat -------------------- Nathaniel Echols Lawrence Berkeley Lab 510-486-5136 [email protected]