It does seem strange the mr_rosetta worked for you.

Did you run 

rosetta.build_phenix_interface nproc=n

and check that it finished successfully?

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty@LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

On Thu, Feb 23, 2017 at 5:00 PM, Yonglin Hu <yonglinhu@gmail.com> wrote:
Hello List,

I have installed the rosetta (version 2016.32.58837) and phenix (dev-2689). I have no problem running phenix.mr_rosetta, but when I run phenix.rosetta_refine or rosetta.run_tests, I always get the following error message:

Sorry:
    The RosettaScripts executable could not be located.  Please set the
    environmental variable PHENIX_ROSETTA_PATH or add the appropriate
    directory to your PATH environment variable.

But I do have relevant environmental variables set up:

ROSETTA3_DB=/usr/local/rosetta_src_2016.32.58837_bundle/main/database
PHENIX=/usr/local/phenix-dev-2689
PHENIX_ROSETTA_PATH=/usr/local/rosetta_src_2016.32.58837_bundle
PHENIX_VERSION=dev-2689

I would appreciate it if you could tell me what really went wrong.

Have a nice day,

Yonglin Hu

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