Re: [phenixbb] "H" atom refining occupancy with previous altconf residue in sequence

On Fri, Oct 26, 2012 at 1:07 PM, Pavel Afonine wrote:

I did not look closely yet but my understanding is that its position is dictated by the next to it residue that has non-blank altlocs, and therefore this hydrogen inherits the conformers. So this behavior is expected. I hoped Jeff will comment on this as he was the first who explained it to me.

This explains the behavior of phenix.ready_set, but not the change to occupancy made by phenix.refine. -Nat