Hi everyone,
I have got a 4.2A SeMet MAD dataset for a protein-DNA complex. And, the native dataset for this protein-DNA complex is ~3.2A. The space group for the native and SeMet crystals seem to be different. I am not sure whether it’s possible to solve the structure with the current data I have, and wondering whether any of you have experience with working with this low-resolution data and any suggestion for me.
I processed the data with XDS in space group P31, and used *.cns.hkl file from XDSCONV as an input for AutoSol and also include the sequence for protein only. The protein dimer has 418 residues and DNA is 32bp. I run Autosol with the default setting. Below is statistics I got. It seems that I didn’t get anything promising. Any comment or suggestion about what to try next? Thank you so much!
Statistics:
Top solution: 2 Sites: 11. Space group: P32. FOM: 0.550.
BAYES-CC: 8.10. Residues: 465 Side-chains: 0. Chains: 60.
Model CC: 0.67 R-work: 0.4100 R-free: 0.4569.
Under Heavy-atom search and phasing:
|
Space group |
# of refined sites |
FOM |
Overall score |
R-factor |
Map skew |
Corr. of local RMS density |
Solution1 |
P31 |
11 |
0.530 |
8.10+/-11.80 |
0.4184 |
-0.12 |
0.66 |
Solution2 |
P32 |
11 |
0.550 |
8.10+/-11.80 |
0.3881 |
-0.10 |
0.66 |
Best,
Wei