On Wed, Mar 16, 2011 at 1:19 PM, Yuri
I checked the log file and it looks like it picked residues to be anisotropic, but when I re-ran it with the automatic selection it did not. Sometimes I have to exit out and re open the GUI so it picks up on changes.
That sounds like a bug. Can you send me the parameter files and log files?
On a different note, I am having trouble running TLS. After I find the optimal number of groups (either through phenix or TLSMD server) my selection shows up on the GUI but there is no button that lets me close that window to move on with the refinement. The only way to close that window is by hitting Cancel, clearly not what we want... If I dont close the window, phenix.refine says I am still editing TLS params and will not start obviously.
Definitely a bug - it is fixed in the nightly builds, but I will send you the patch for 1.7. However, the "Update and exit" button on the toolbar (green checkmark) closes the window. (So does the cancel button.) -Nat