Dear AFSHAN, the simple and qucik command egrep -v "^ATOM|HETATM.*H$" your.pdb > your_noH.pdb should also work. Best, Tim On 02/06/2014 06:12 PM, Afshan Begum wrote:
Dear Experts,
Could you kindly tell me how can i remove hydrogen from my coordinate. Actually i refine my structure with phenix along all hydrogen now its almost done but before submitting the molecule into PDB data bank i want to remove hydrogen from the coordinate which i do not know how to do, suggestion would be appreciated
Best Regards
AFSHAN
=========================================== Dr. Afshan Begum
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