Dear all,
I have been trying to install rosetta (both release 371 and
20221.16.61629)/phenix (1.21.1-5286) interface in Ubuntu 24.04,
but with no success at all. Both Rosetta installation and
"rosetta.build_phenix_interface" ends up with no erros. But, when
I run "rosetta.run_tests" or try to "phenix.rosetta_refine" I
always get the error below:
-------
Generating 2 models on 1 processors...
DEBUG dumping error message
ERROR: Rosetta exited with status 139
stderr output:
AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF
ROSETTA_CRASH.log FOR DETAILS.
Segmentation fault (core dumped)
Traceback (most recent call last):
File
"/home/lucas/pckg/phenix-1.21.1-5286/build/../modules/phenix/phenix/command_line/rosetta_refine.py",
line 315, in <module>
run(sys.argv[1:], create_dir=True)
File
"/home/lucas/pckg/phenix-1.21.1-5286/build/../modules/phenix/phenix/command_line/rosetta_refine.py",
line 198, in run
debug=params.output.debug)
File
"/home/lucas/pckg/phenix-1.21.1-5286/modules/phenix/phenix/rosetta/refine.py",
line 329, in __init__
self.run_jobs()
File
"/home/lucas/pckg/phenix-1.21.1-5286/modules/phenix/phenix/rosetta/refine.py",
line 403, in run_jobs
check_result(result)
File
"/home/lucas/pckg/phenix-1.21.1-5286/modules/phenix/phenix/rosetta/refine.py",
line 394, in check_result
raise RuntimeError("Aborted due to error in job %d." %
result.job_id)
RuntimeError: Aborted due to error in job 1.
Something tells me this is related to the drop of support to Python2 in the new Ubuntu release, but I could not figure out what exactly is the issue. I uploaded both stdout and ROSETTA_CRASH.log in this email.
-------
If anyone can help me with this issue, I would be very happy.
Thank you all!
Lucas