On Wed, Mar 27, 2013 at 12:16 PM, Scott Classen
We have a HPC cluster configured with TORQUE/MAUI. I see in the Phenix GUI that there is some sort of ability to queue jobs to run via qsub. I can't find any documentation on how to set this up.
My fault, sorry. Will add this to the ever-expanding to-do list. It should support PBS-derived queuing systems such as Torque - you will simply need to enable queuing and specify PBS as the system type in the preferences (under "Process control"). Caveat: this is not especially well tested at the moment (we only have SGE on our systems), some users have had to provide a custom qsub command to get it to work properly.
If I'm working at my office computer and I want to submit to a remote server cluster for refinement, is this possible? Or is it assumed that qsub is available on the local machine?
"Probably not" and "yes", respectively. It may be possible to trick the GUI into submitting jobs via SSH, but we have not tried this and I suspect there will be many practical issues that prevent it from working. Do you at least have the same filesystem(s) on your office machine and the cluster? That is an absolute requirement right now. -Nat