Re: [cctbxbb] cctbxbb Digest, Vol 85, Issue 21
Hi Markus, I was gonna ask why don't you guys set up a windows machine and test for the cctbx crash on that? The VC++9.0 compiler is free and if you use the python that comes in a phenix for windows installation the necessary modules are all present. Rob On 22/04/2016 09:35, [email protected] wrote:
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Today's Topics:
1. Re: new fail on windows ([email protected])
----------------------------------------------------------------------
Message: 1 Date: Fri, 22 Apr 2016 08:35:42 +0000 From:
To: Subject: Re: [cctbxbb] new fail on windows Message-ID: <415F7F573406BB498256C68158D456746125C23B@EXCHMBX01.fed.cclrc.ac.uk> Content-Type: text/plain; charset="utf-8" Hi Nigel,
Hopefully this is fixed with r24353.
One question: Do you think it would be possible to install https://pypi.python.org/pypi/junit-xml on your build machines, run libtbx.run_tests_parallel with the output_junit_xml=True option, and collect the output.xml files somewhere where we can download them?
At the moment we do monitor the buildbot status - but only in a very coarse way. We only see test failures on a high level, see attached screenshot. As you can see there are a number of things broken, some of them for quite some time, so because on that level there is always something guaranteed to fail the overall status we see is always set to ?warning?. I don?t think any of us bothers anymore looking into the details, a number of errors are about things we can?t do anything about anyway.
However, if you could give us a collection of output.xml?s we could, instead of taking the overall build status, use the test results and set up a DIALS-East internal mail on the buildbot test status. Then we would pick up these things earlier.
Best wishes, -Markus
From: [email protected] [mailto:[email protected]] On Behalf Of Nigel Moriarty Sent: 21 April 2016 17:41 To: cctbx mailing list Subject: [cctbxbb] new fail on windows
********************************************************************************
ERROR: 1 TEST FAILURES. PLEASE FIX BEFORE COMMITTING CODE.
********************************************************************************
Standard error:
Traceback (most recent call last):
File "c:\users\builder\slave\cctbx-nightly-intel-windows\modules\cctbx_project\libtbx\tst_easy_mp.py", line 210, in <module>
run(args=sys.argv[1:])
File "c:\users\builder\slave\cctbx-nightly-intel-windows\modules\cctbx_project\libtbx\tst_easy_mp.py", line 205, in run
check_if_stacktrace_is_propagated_properly(method='multiprocessing')
File "c:\users\builder\slave\cctbx-nightly-intel-windows\modules\cctbx_project\libtbx\tst_easy_mp.py", line 187, in check_if_stacktrace_is_propagated_properly
assert isinstance(e, exceptions.ZeroDivisionError) or "ZeroDivisionError" in str(e), "Exception type mismatch: %s" % str(e)
AssertionError: Exception type mismatch: Can't pickle
: it's not found as __main__.may_divide_by_zero Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\lib\multiprocessing\forking.py", line 381, in main
self = load(from_parent)
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\lib\pickle.py", line 1378, in load
return Unpickler(file).load()
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\lib\pickle.py", line 858, in load
dispatch[key](self)
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\lib\pickle.py", line 880, in load_eof
raise EOFError
EOFError Cheers
Nigel
--- Nigel W. Moriarty Building 33R0349, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Phone : 510-486-5709 Email : [email protected]mailto:[email protected] Fax : 510-486-5909 Web : CCI.LBL.govhttp://CCI.LBL.gov
-- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
Hi Rob, This unfortunately is for reasons that are not of a technical or software licensing nature (OSI layer 9). We are in contact with people at the STFC who might at some point provide us with a windows build service for DIALS. But this is early days. Best wishes, -Markus -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of R.D. Oeffner Sent: 22 April 2016 10:51 To: [email protected] Subject: Re: [cctbxbb] cctbxbb Digest, Vol 85, Issue 21 Hi Markus, I was gonna ask why don't you guys set up a windows machine and test for the cctbx crash on that? The VC++9.0 compiler is free and if you use the python that comes in a phenix for windows installation the necessary modules are all present. Rob On 22/04/2016 09:35, [email protected] wrote:
Send cctbxbb mailing list submissions to [email protected]
To subscribe or unsubscribe via the World Wide Web, visit http://phenix-online.org/mailman/listinfo/cctbxbb or, via email, send a message with subject or body 'help' to [email protected]
You can reach the person managing the list at [email protected]
When replying, please edit your Subject line so it is more specific than "Re: Contents of cctbxbb digest..."
Today's Topics:
1. Re: new fail on windows ([email protected])
----------------------------------------------------------------------
Message: 1 Date: Fri, 22 Apr 2016 08:35:42 +0000 From:
To: Subject: Re: [cctbxbb] new fail on windows Message-ID: <415F7F573406BB498256C68158D456746125C23B@EXCHMBX01.fed.cclrc.ac.uk> Content-Type: text/plain; charset="utf-8" Hi Nigel,
Hopefully this is fixed with r24353.
One question: Do you think it would be possible to install https://pypi.python.org/pypi/junit-xml on your build machines, run libtbx.run_tests_parallel with the output_junit_xml=True option, and collect the output.xml files somewhere where we can download them?
At the moment we do monitor the buildbot status - but only in a very coarse way. We only see test failures on a high level, see attached screenshot. As you can see there are a number of things broken, some of them for quite some time, so because on that level there is always something guaranteed to fail the overall status we see is always set to ?warning?. I don?t think any of us bothers anymore looking into the details, a number of errors are about things we can?t do anything about anyway.
However, if you could give us a collection of output.xml?s we could, instead of taking the overall build status, use the test results and set up a DIALS-East internal mail on the buildbot test status. Then we would pick up these things earlier.
Best wishes, -Markus
From: [email protected] [mailto:[email protected]] On Behalf Of Nigel Moriarty Sent: 21 April 2016 17:41 To: cctbx mailing list Subject: [cctbxbb] new fail on windows
********************************************************************** **********
ERROR: 1 TEST FAILURES. PLEASE FIX BEFORE COMMITTING CODE.
********************************************************************** **********
Standard error:
Traceback (most recent call last):
File "c:\users\builder\slave\cctbx-nightly-intel-windows\modules\cctbx_proj ect\libtbx\tst_easy_mp.py", line 210, in <module>
run(args=sys.argv[1:])
File "c:\users\builder\slave\cctbx-nightly-intel-windows\modules\cctbx_proj ect\libtbx\tst_easy_mp.py", line 205, in run
check_if_stacktrace_is_propagated_properly(method='multiprocessing')
File "c:\users\builder\slave\cctbx-nightly-intel-windows\modules\cctbx_proj ect\libtbx\tst_easy_mp.py", line 187, in check_if_stacktrace_is_propagated_properly
assert isinstance(e, exceptions.ZeroDivisionError) or "ZeroDivisionError" in str(e), "Exception type mismatch: %s" % str(e)
AssertionError: Exception type mismatch: Can't pickle
: it's not found as __main__.may_divide_by_zero Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\li b\multiprocessing\forking.py", line 381, in main
self = load(from_parent)
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\li b\pickle.py", line 1378, in load
return Unpickler(file).load()
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\li b\pickle.py", line 858, in load
dispatch[key](self)
File "C:\Users\builder\slave\cctbx-nightly-intel-windows\base\bin\python\li b\pickle.py", line 880, in load_eof
raise EOFError
EOFError Cheers
Nigel
--- Nigel W. Moriarty Building 33R0349, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory Berkeley, CA 94720-8235 Phone : 510-486-5709 Email : [email protected]mailto:[email protected] Fax : 510-486-5909 Web : CCI.LBL.govhttp://CCI.LBL.gov
-- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://phenix-online.org/pipermail/cctbxbb/attachments/20160422/356d5 90d/attachment.htm> -------------- next part -------------- A non-text attachment was scrubbed... Name: buildbot-monitoring.png Type: image/png Size: 201454 bytes Desc: buildbot-monitoring.png URL: <http://phenix-online.org/pipermail/cctbxbb/attachments/20160422/356d5 90d/attachment.png>
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End of cctbxbb Digest, Vol 85, Issue 21 ***************************************
cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
participants (2)
-
markus.gerstel@diamond.ac.uk
-
R.D. Oeffner