Hi Wolfram Sorry, step 3 should be, 3) python modules/cctbx_project/libtbx/auto_build/bootstrap.py base --use-conda You do not need the --builder argument. -- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Tel: (510) 486-5709 Fax: (510) 486-5909 Web: https://phenix-online.org On Fri, Aug 23, 2019 at 6:21 PM Billy Poon wrote:

Hi Wolfram,

Sorry for the issue, are you using a recent build of CCTBX? Can you try these steps?

1) cd <CCTBX directory> 2) rm -fr conda_base 3) python modules/cctbx_project/libtbx/auto_build/bootstrap.py base --builder=phenix --use-conda

It basically recreates the dependencies directory. It's using conda, so it should take less than 5 minutes. If you are using conda, you will need conda version 4.4 or greater.

Let me know if that doesn't solve the problem. Thanks!

-- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Tel: (510) 486-5709 Fax: (510) 486-5909 Web: https://phenix-online.org

On Fri, Aug 23, 2019 at 12:55 PM wtempel wrote:

...

Hi, Currently, cctbx.python behaves like described in this stackoverflow post:

https://stackoverflow.com/questions/893053/seeing-escape-characters-when-pre.... I am missing the convenience of backspace delete, which is available on /usr/bin/python interactive sessions. Could that feature be added during compilation of the pre-built cctbx distributions? Regards. Wolfram Tempel _______________________________________________ cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb