flex.histogram giving ArgumentError when arguments correct
H = flex.histogram(coords, data_min=0.0, data_max=dim, n_slots=dim)
Gives
Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in
histogram.__init__(histogram)
did not match C++ signature:
__init__(_object*, double, double, double, scitbx::af::shared<long>, unsigned long)
__init__(_object*, scitbx::histogram
Not a specialist in boost.python by any stretch - but as a quick sanity check, have you tried data_max=float(dim) to see if it's failing to do the implicit conversion? On 2020-08-04 12:56, Winter, Graeme (DLSLtd,RAL,LSCI) wrote:
H = flex.histogram(coords, data_min=0.0, data_max=dim, n_slots=dim)
Gives
Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in histogram.__init__(histogram) did not match C++ signature: __init__(_object*, double, double, double, scitbx::af::shared<long>, unsigned long) __init__(_object*, scitbx::histogram
other, scitbx::af::const_ref data, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, double data_min, double data_max, unsigned long n_slots=1000, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, unsigned long n_slots=1000) Despite
coords being
with shape
(31294944,)
and dim being 18093576 (i.e. integer)
and
h = flex.histogram(a, data_min=0, data_max=100, n_slots=100)
working fine in another context i.e. the calling convention is correct
This has so far cost a few hours, so what gives? How can this be holding it wrong? C++ code suggests that the bin types are long so this should be fine
Any hints?
Thanks Graeme
Hi Tristan Given that it worked for other integers as input (as shown further down) I’d hope this makes no difference however H = flex.histogram(data=coords, data_min=0.0, data_max=float(dim), n_slots=dim) Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in Nope :-( It still fails… This one is properly weird… Thanks Graeme
On 4 Aug 2020, at 13:14, Tristan Croll
wrote: Not a specialist in boost.python by any stretch - but as a quick sanity check, have you tried data_max=float(dim) to see if it's failing to do the implicit conversion?
On 2020-08-04 12:56, Winter, Graeme (DLSLtd,RAL,LSCI) wrote:
H = flex.histogram(coords, data_min=0.0, data_max=dim, n_slots=dim) Gives Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in histogram.__init__(histogram) did not match C++ signature: __init__(_object*, double, double, double, scitbx::af::shared<long>, unsigned long) __init__(_object*, scitbx::histogram
other, scitbx::af::const_ref data, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, double data_min, double data_max, unsigned long n_slots=1000, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, unsigned long n_slots=1000) Despite coords being with shape (31294944,) and dim being 18093576 (i.e. integer) and h = flex.histogram(a, data_min=0, data_max=100, n_slots=100) working fine in another context i.e. the calling convention is correct This has so far cost a few hours, so what gives? How can this be holding it wrong? C++ code suggests that the bin types are long so this should be fine Any hints? Thanks Graeme
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An out-there possibility - but in the past I ran into a similar head-scratcher when working with SWIG (thankful to not be using that any more). Numpy integer scalars are distinct from the Python int type, leading to similar error messages when you try to feed one into a SWIG-wrapped function expecting a C++ integer type. Had to be explicitly cast on the Python side first, i.e. int(numpy_array_of_ints[i]). On 2020-08-04 13:19, Winter, Graeme (DLSLtd,RAL,LSCI) wrote:
Hi Tristan
Given that it worked for other integers as input (as shown further down) I’d hope this makes no difference however
H = flex.histogram(data=coords, data_min=0.0, data_max=float(dim), n_slots=dim) Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in
Nope :-(
It still fails…
This one is properly weird…
Thanks Graeme
On 4 Aug 2020, at 13:14, Tristan Croll
wrote: Not a specialist in boost.python by any stretch - but as a quick sanity check, have you tried data_max=float(dim) to see if it's failing to do the implicit conversion?
On 2020-08-04 12:56, Winter, Graeme (DLSLtd,RAL,LSCI) wrote:
H = flex.histogram(coords, data_min=0.0, data_max=dim, n_slots=dim) Gives Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in histogram.__init__(histogram) did not match C++ signature: __init__(_object*, double, double, double, scitbx::af::shared<long>, unsigned long) __init__(_object*, scitbx::histogram
other, scitbx::af::const_ref data, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, double data_min, double data_max, unsigned long n_slots=1000, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, unsigned long n_slots=1000) Despite coords being with shape (31294944,) and dim being 18093576 (i.e. integer) and h = flex.histogram(a, data_min=0, data_max=100, n_slots=100) working fine in another context i.e. the calling convention is correct This has so far cost a few hours, so what gives? How can this be holding it wrong? C++ code suggests that the bin types are long so this should be fine Any hints? Thanks Graeme
cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb
Oh right, this one has legs, trying it Right, you nailed it, + many points for Team Croll, much appreciated! Dang “the wrong sort of int” with no hint of this. sweet. I have no idea about how to trap this more usefully, maybe should just copy the stack trace into an issue and then close with the workaround so $person-in-future googling has some hope of finding a solution But… is fixed, so thanks!
On 4 Aug 2020, at 13:25, Tristan Croll
wrote: An out-there possibility - but in the past I ran into a similar head-scratcher when working with SWIG (thankful to not be using that any more). Numpy integer scalars are distinct from the Python int type, leading to similar error messages when you try to feed one into a SWIG-wrapped function expecting a C++ integer type. Had to be explicitly cast on the Python side first, i.e. int(numpy_array_of_ints[i]).
On 2020-08-04 13:19, Winter, Graeme (DLSLtd,RAL,LSCI) wrote:
Hi Tristan Given that it worked for other integers as input (as shown further down) I’d hope this makes no difference however H = flex.histogram(data=coords, data_min=0.0, data_max=float(dim), n_slots=dim) Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in Nope :-( It still fails… This one is properly weird… Thanks Graeme
On 4 Aug 2020, at 13:14, Tristan Croll
wrote: Not a specialist in boost.python by any stretch - but as a quick sanity check, have you tried data_max=float(dim) to see if it's failing to do the implicit conversion? On 2020-08-04 12:56, Winter, Graeme (DLSLtd,RAL,LSCI) wrote: H = flex.histogram(coords, data_min=0.0, data_max=dim, n_slots=dim) Gives Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in histogram.__init__(histogram) did not match C++ signature: __init__(_object*, double, double, double, scitbx::af::shared<long>, unsigned long) __init__(_object*, scitbx::histogram
other, scitbx::af::const_ref data, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, double data_min, double data_max, unsigned long n_slots=1000, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, unsigned long n_slots=1000) Despite coords being with shape (31294944,) and dim being 18093576 (i.e. integer) and h = flex.histogram(a, data_min=0, data_max=100, n_slots=100) working fine in another context i.e. the calling convention is correct This has so far cost a few hours, so what gives? How can this be holding it wrong? C++ code suggests that the bin types are long so this should be fine Any hints? Thanks Graeme
cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb
cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb
-- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
Excellent! On 2020-08-04 13:31, Winter, Graeme (DLSLtd,RAL,LSCI) wrote:
Oh right, this one has legs, trying it
Right, you nailed it, + many points for Team Croll, much appreciated!
Dang
“the wrong sort of int” with no hint of this. sweet.
I have no idea about how to trap this more usefully, maybe should just copy the stack trace into an issue and then close with the workaround so $person-in-future googling has some hope of finding a solution
But… is fixed, so thanks!
On 4 Aug 2020, at 13:25, Tristan Croll
wrote: An out-there possibility - but in the past I ran into a similar head-scratcher when working with SWIG (thankful to not be using that any more). Numpy integer scalars are distinct from the Python int type, leading to similar error messages when you try to feed one into a SWIG-wrapped function expecting a C++ integer type. Had to be explicitly cast on the Python side first, i.e. int(numpy_array_of_ints[i]).
On 2020-08-04 13:19, Winter, Graeme (DLSLtd,RAL,LSCI) wrote:
Hi Tristan Given that it worked for other integers as input (as shown further down) I’d hope this makes no difference however H = flex.histogram(data=coords, data_min=0.0, data_max=float(dim), n_slots=dim) Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in Nope :-( It still fails… This one is properly weird… Thanks Graeme
On 4 Aug 2020, at 13:14, Tristan Croll
wrote: Not a specialist in boost.python by any stretch - but as a quick sanity check, have you tried data_max=float(dim) to see if it's failing to do the implicit conversion? On 2020-08-04 12:56, Winter, Graeme (DLSLtd,RAL,LSCI) wrote: H = flex.histogram(coords, data_min=0.0, data_max=dim, n_slots=dim) Gives Boost.Python.ArgumentError: Please report this error to [email protected]: Python argument types in histogram.__init__(histogram) did not match C++ signature: __init__(_object*, double, double, double, scitbx::af::shared<long>, unsigned long) __init__(_object*, scitbx::histogram
other, scitbx::af::const_ref data, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, double data_min, double data_max, unsigned long n_slots=1000, double relative_tolerance=0.0001) __init__(_object*, scitbx::af::const_ref data, unsigned long n_slots=1000) Despite coords being with shape (31294944,) and dim being 18093576 (i.e. integer) and h = flex.histogram(a, data_min=0, data_max=100, n_slots=100) working fine in another context i.e. the calling convention is correct This has so far cost a few hours, so what gives? How can this be holding it wrong? C++ code suggests that the bin types are long so this should be fine Any hints? Thanks Graeme
cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb
cctbxbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/cctbxbb
participants (2)
-
Tristan Croll
-
Winter, Graeme (DLSLtd,RAL,LSCI)