Hi David,

That's a great resource and already much appreciated as I hadn't realised there were other sources out there.

I found a couple of additional resources that I don't think are on your list:

http://cctbxwiki.bravais.net/CCTBX_Wiki

http://cci.lbl.gov/cctbx_docs/index.html

Best wishes,

Jens

From: [email protected] [[email protected]] on behalf of David Waterman [[email protected]]
Sent: 14 January 2015 16:01
To: cctbx mailing list
Subject: [cctbxbb] directory of cctbx tutorials

Hi all,

I've just spent a little time with Google collecting together tutorials for CCTBX and related open-source projects. I'm sure this is not a complete list, so I thought I'd share in case anyone knows of some other sources to add to it. I'm collecting this because the DIALS project is involved in workshops and teaching. My main interest is in diffraction data processing, but all tutorials that use core modules and types from cctbx are of interest, for potential updating/cannibalisation.

General/developer

Tour of the cctbx http://cctbx.sourceforge.net/current/tour.html
Making compiled extensions. cctbx_introduction_3 at https://sourceforge.net/p/dials/code/HEAD/tree/trunk/doc/developer/

Data processing

Various tutorials on free-electron laser data processing (cctbx.xfel) at http://viper.lbl.gov/cctbx.xfel/index.php/Tutorials
CCTBX for diffraction calculations. cctbx_introduction_{1,2} at https://sourceforge.net/p/dials/code/HEAD/tree/trunk/doc/developer/
Powder diffraction unit cell refinement (Siena 2005) http://cctbx.sourceforge.net/siena2005/unit_cell_refinement.html
Data processing with DIALS. 4 tutorials at http://dials.sourceforge.net/doc/index.html

Coordinate handling

PDB truncate to Ala (SBGrid 2008) (iotbx.pdb) at http://cctbx.sourceforge.net/sbgrid2008/tutorial.html

Phasing

Direct methods (Siena 2005) http://cctbx.sourceforge.net/siena2005/direct_methods_light.html

Model refinement

Rigid body refinement (IUCr 2008) at http://cctbx.sourceforge.net/iucr2008/rigid_body_refinement_core.html

-- David