On 06 Nov 2017, at 21:39, Billy Poon <[email protected]> wrote:

Also, if you already have cctbx installed, you can install scipy into that version of python by,

cctbx.python -m pip install scipy

That command places scipy in the same location as the other cctbx dependencies.

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Billy K. Poon

Research Scientist, Molecular Biophysics and Integrated Bioimaging

Lawrence Berkeley National Laboratory

1 Cyclotron Road, M/S 33R0345

Berkeley, CA 94720

Tel: (510) 486-5709

Fax: (510) 486-5909

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On Mon, Nov 6, 2017 at 12:32 PM, Peter Zwart <[email protected]> wrote:

I find the easiest way to do this is to install scipy with pip, and use the python associated with that install to be used as the python to compile the cctbx under. 

P

On 6 November 2017 at 12:18, Magnus Andersson <magnus.andersson@scilifelab.se> wrote:

Hello,

I am not normally using cctbx but I’m trying to run a script that imports modules as follows:

import sys,io,os

import subprocess

import numpy

import pickle

import math

import pylab

#import pymol

import time

import scipy

import iotbx.pdb

import cctbx

import mmtbx.model

from scipy.optimize import fmin, fmin_cg, leastsq

from scipy.interpolate import interp1d

import datetime

from numpy.random import random_sample

from cctbx.array_family import flex

from scitbx.math import superpose

I have installed cctbx and run with cctbx.python.

How can I import scipy into the cctbx python?

Cheers,

Magnus

 

####

Magnus Andersson, Docent, Ph.D.

Email: [email protected]

Phone: 0769469872

Mailing address:

Science For Life Laboratory

Alpha 6

Box 1031

171 21 Solna

Visiting address:

Tomtebodavägen 23A

171 65 Solna

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Molecular Biophysics and Integrated Bioimaging &

Center for Advanced Mathematics for Energy Research Applications

Lawrence Berkeley National Laboratories
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