Exhibit A:
libtbx.python "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/tst.py"
rstbx.simage.explore_completeness d_min=10
rstbx.simage.explore_completeness d_min=10 intensity_symmetry=P4 use_symmetry=True multiprocessing=True
rstbx.simage.solver d_min=5
rstbx.simage.solver d_min=5 lattice_symmetry=R32:R intensity_symmetry=R3:R
rstbx.simage.solver d_min=5 lattice_symmetry=R32:R intensity_symmetry=P1
rstbx.simage.solver d_min=5 lattice_symmetry=P422 intensity_symmetry=P4 index_and_integrate=True multiprocessing=True
Traceback (most recent call last):
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/tst.py", line 273, in <module>
run(args=sys.argv[1:])
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/tst.py", line 269, in run
exercise_solver()
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/tst.py", line 255, in exercise_solver
"index_and_integrate=True", "multiprocessing=True"])
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/tst.py", line 213, in run
command=cmd, stdout_splitlines=False).raise_if_errors().stdout_ buffer
File "/Users/graeme/svn/cctbx/modules/cctbx_project/libtbx/ easy_run.py", line 39, in raise_if_errors
raise Error(msg)
RuntimeError: child process stderr output:
command: 'rstbx.simage.solver d_min=5 lattice_symmetry=P422 intensity_symmetry=P4 index_and_integrate=True multiprocessing=True'
Traceback (most recent call last):
File "/Users/graeme/svn/cctbx/build/../modules/cctbx_ project/rstbx/command_line/sim age.solver.py ", line 5, in <module>
run(args=sys.argv[1:])
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/solver.py", line 1161, in run
return run_fresh(args)
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/solver.py", line 1145, in run_fresh
process(work_params, i_calc)
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/solver.py", line 1088, in process
process_core(work_params, i_calc.p1_anom, reindexing_assistant, image_mdls)
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/solver.py", line 985, in process_core
work_params, reindexing_assistant, image_mdls, usables)
File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/ simage/solver.py", line 883, in build_image_cluster
raise RuntimeError("Insufficient connectivity between images.")
RuntimeError: Insufficient connectivity between images.
usr+sys time: 0.78 seconds, ticks: 777467, micro-seconds/tick: 1.003
wall clock time: 6.99 seconds
OS X & RHEL6
Any volunteers?
Cheers Graeme
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