Re: [cctbxbb] bootstrap.py build on Ubuntu

David, I notice that the Pango version, 1.16.1, was released in 2007, so perhaps it is no surprise that the latest Ubuntu does not support it. Maybe this calls for stepping forward the Pango version until you find one that works. I see that the latest stable release is 1.39. This would be valuable information for us..Billy Poon in the Phenix group is supporting the Phenix GUI, so it might be advisable for him to update the Pango version in the base installer. Nick Nicholas K. Sauter, Ph. D. Computer Staff Scientist, Molecular Biophysics and Integrated Bioimaging Division Lawrence Berkeley National Laboratory 1 Cyclotron Rd., Bldg. 33R0345 Berkeley, CA 94720 (510) 486-5713 On Thu, Jan 7, 2016 at 8:54 AM, David Waterman wrote:

Hi again

Another data point: I just tried this on a different Ubuntu machine, this time running 14.04. In this case pango installed just fine. In fact all other packages installed too and the machine is now compiling cctbx.

I might have enough for comparison between the potentially working 14.04 and failed 15.04 builds to figure out what is wrong in the second case.

Cheers

-- David

On 7 January 2016 at 09:56, David Waterman wrote:

...

Hi folks

I recently tried building cctbx+dials on Ubuntu 15.04 following the instructions here: http://dials.github.io/documentation/installation_developer.html

This failed during installation of pango-1.16.1. Looking at pango_install_log, I see the command that failed was as follows:

gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DSYSCONFDIR=\"/home/fcx32934/sw/dials_bootstrap_test/base/etc\" -DLIBDIR=\"/home/fcx32934/sw/dials_bootstrap_test/base/lib\" -DG_DISABLE_CAST_CHECKS -I../.. -DG_DISABLE_DEPRECATED -I/home/fcx32934/sw/dials_bootstrap_test/base/include -I/home/fcx32934/sw/dials_bootstrap_test/base/include/freetype2 -g -O2 -Wall -MT fribidi.lo -MD -MP -MF .deps/fribidi.Tpo -c fribidi.c -fPIC -DPIC -o .libs/fribidi.o In file included from fribidi.h:31:0, from fribidi.c:28: fribidi_config.h:1:18: fatal error: glib.h: No such file or directory

The file glib.h appears to be in base/include/glib-2.0/, however this directory was not explicitly included in the command above, only its parent. This suggests a configuration failure in pango to me. Taking a look at base_tmp/pango-1.16.1/config.log, I see what look like the relevant lines:

configure:22227: checking for GLIB configure:22235: $PKG_CONFIG --exists --print-errors "$GLIB_MODULES" configure:22238: $? = 0 configure:22253: $PKG_CONFIG --exists --print-errors "$GLIB_MODULES" configure:22256: $? = 0 configure:22304: result: yes

but this doesn't tell me very much. Does anyone have any suggestions as to how I might proceed?

Many thanks

-- David

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